HL_5FDV_066

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAG

Length

3 nucleotides

Bulged bases

5FDV|1|1A|A|2812

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDV_066 not in the Motif Atlas

Homologous match to HL_8VTW_066

Geometric discrepancy: 0.5666

The information below is about HL_8VTW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00807.1

Basepair signature

cWW

Number of instances in this motif group

8

Unit IDs

5FDV|1|1A|C|2807
5FDV|1|1A|A|2812
5FDV|1|1A|G|2813

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains