Motif HL_00807.1 Version HL_00807.1 of this group appears in releases 3.87 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 1-2 | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1WZ2_006 | 1WZ2 | 0.5977 | 7 | Pseudoknot geometry | D | tRNA | A | 934 | U | 942 | cWW |
| 2 | HL_4KR9_003 | 4KR9 | 0.9372 | 4 | X | RNA (39-MER) | G | 10 | C | 15 | cWW | |
| 3 | HL_8V1I_005 | 8V1I | 0.6110 | 7 | B | MALAT1-associated small cytoplasmic RNA/MEN beta RNA | U | 22 | A | 30 | cWW | |
| 4 | HL_5J7L_135 | 5J7L | 0.6453 | 7 | Pseudoknot geometry (H) | DA | LSU rRNA | U | 87 | A | 95 | cWW |
| 5 | HL_3SKI_002 | 3SKI | 0.0000 | 6 | Pseudoknot geometry | A | 2dG-I riboswitch aptamer | G | 53 | C | 60 | cWW |
| 6 | HL_3SKL_005 | 3SKL | 0.1101 | 6 | Pseudoknot geometry | B | 2dG-I riboswitch aptamer | G | 52 | C | 59 | cWW |
| 7 | HL_8VTW_066 | 8VTW | 0.4190 | 1 | 1A | LSU rRNA | C | 2794 | G | 2802 | cWW | |
| 8 | HL_3V7E_001 | 3V7E | 0.5374 | 5 | Pseudoknot geometry | C | SAM-I riboswitch | G | 23 | C | 29 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACCCCGC | 2 |
| ACUCAAGAU | 1 |
| GUGUCC | 1 |
| UGGUUUCCA | 1 |
| UGAUAUGAA | 1 |
| CAG | 1 |
| GACUGGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACCCCG | 2 |
| CUCAAGA | 1 |
| UGUC | 1 |
| GGUUUCC | 1 |
| GAUAUGA | 1 |
| A | 1 |
| ACUGG | 1 |
Release history
| Release | 3.87 |
|---|---|
| Date | 2024-08-14 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot geometry (4)
- (3)
- Pseudoknot geometry (H) (1)
- Basepair signature
- cWW
- Heat map statistics
- Min 0.11 | Avg 0.57 | Max 0.95
Coloring options: