HL_5FDV_069

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAUUCCG

Length

7 nucleotides

Bulged bases

5FDV|1|1B|U|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02733.4

Basepair signature

cWW-R-R-R

Number of instances in this motif group

7

Unit IDs

5FDV|1|1B|C|38
5FDV|1|1B|A|39
5FDV|1|1B|U|40
5FDV|1|1B|U|41
5FDV|1|1B|C|42
5FDV|1|1B|C|43
5FDV|1|1B|G|44

Current chains

Chain 1B

5S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L31

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1G

50S ribosomal protein L5

Chain 1S

50S ribosomal protein L18