Motif HL_02733.4 Version HL_02733.4 of this group appears in releases 3.48 to 3.53

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6	1-6
1	HL_5TBW_185	5TBW	0.2576	0	AS	5S rRNA	C	36	G	37	U	38	C	39	C	40	G	41	cWW
2	HL_1MJI_002	1MJI	0.0928	1	D	5S rRNA fragment	C	38	A	39	U	40	C	42	C	43	G	44	cWW
3	HL_5J7L_203	5J7L	0.0000	1	DB	5S rRNA	C	38	A	39	U	40	C	42	C	43	G	44	cWW
4	HL_5FDV_069	5FDV	0.0753	1	1B	5S rRNA	C	38	A	39	U	40	C	42	C	43	G	44	cWW
5	HL_4V9F_071	4V9F	0.1161	1	9	5S rRNA	C	37	A	38	U	39	C	41	C	42	G	43	cWW
6	HL_4WF9_066	4WF9	0.2370	1	Y	5S rRNA	C	36	A	37	U	38	C	40	C	41	G	42	cWW
7	HL_7A0S_069	7A0S	0.4959	1	Y	5S rRNA	C	40	A	41	U	42	C	44	C	45	G	46	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAUGCCG	4
CGUCCG	1
CAUUCCG	1
CAUCCCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUGCC	4
GUCC	1
AUUCC	1
AUCCC	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (7)
Basepair signature: cWW-R-R-R
Heat map statistics: Min 0.08 | Avg 0.25 | Max 0.65

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