HL_5FDV_135

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

5FDV|1|2A|G|1325, 5FDV|1|2A|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDV_135 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.072

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

5FDV|1|2A|G|1324
5FDV|1|2A|G|1325
5FDV|1|2A|U|1326
5FDV|1|2A|C|1327
5FDV|1|2A|G|1328
5FDV|1|2A|U|1329
5FDV|1|2A|C|1330

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2R

50S ribosomal protein L17

Chain 2W

50S ribosomal protein L22