HL_5FDV_156

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5FDV|1|2A|A|2268, 5FDV|1|2A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDV_156 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0484

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5FDV|1|2A|C|2264
5FDV|1|2A|U|2265
5FDV|1|2A|A|2266
5FDV|1|2A|A|2267
5FDV|1|2A|A|2268
5FDV|1|2A|A|2269
5FDV|1|2A|G|2270
5FDV|1|2A|G|2271
5FDV|1|2A|U|2272
5FDV|1|2A|A|2273
5FDV|1|2A|A|2274
5FDV|1|2A|C|2275
5FDV|1|2A|G|2276

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25