HL_5FDV_164

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDV_164 not in the Motif Atlas

Homologous match to HL_5J7L_195

Geometric discrepancy: 0.1051

The information below is about HL_5J7L_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5FDV|1|2A|C|2551
5FDV|1|2A|OMU|2552
5FDV|1|2A|G|2553
5FDV|1|2A|U|2554
5FDV|1|2A|U|2555
5FDV|1|2A|C|2556
5FDV|1|2A|G|2557

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2y

Pyrrhocoricin