HL_5FJ4_001

3D structure

PDB id

5FJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the standard kink turn HmKt-7 as stem loop bound with U1A and L7Ae proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases

5FJ4|1|D|U|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FJ4_001 not in the Motif Atlas

Geometric match to HL_5FJ4_002

Geometric discrepancy: 0.0997

The information below is about HL_5FJ4_002

Detailed Annotation

U1 small nuclear ribonucleoprotein A binding hairpin

Broad Annotation

No text annotation

Motif group

HL_33074.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5FJ4|1|D|C|11
5FJ4|1|D|A|12
5FJ4|1|D|U|13
5FJ4|1|D|U|14
5FJ4|1|D|G|15
5FJ4|1|D|C|16
5FJ4|1|D|A|17
5FJ4|1|D|C|18
5FJ4|1|D|U|19
5FJ4|1|D|C|20
5FJ4|1|D|C|21
5FJ4|1|D|G|22

Current chains

Chain D

HMKT-7

Nearby chains

Chain A

U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A