HL_5FKD_005

3D structure

PDB id

5FKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FKD_005 not in the Motif Atlas

Geometric match to HL_5F9F_003

Geometric discrepancy: 0.1445

The information below is about HL_5F9F_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

5FKD|1|A|A|49||||7_555
5FKD|1|A|G|50||||7_555
5FKD|1|A|A|51||||7_555
5FKD|1|A|A|52||||7_555
5FKD|1|A|A|53||||7_555
5FKD|1|A|U|54||||7_555

Current chains

Chain A

SAM-I RIBOSWITCH

Nearby chains