Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5FKD_0011/A/23:29Pseudoknot geometry
homologous
HL_4AOB_001
HL_30680.4
HL_5FKD_0021/A/49:54GNRA
homologous
HL_5FJC_002
HL_34789.1
HL_5FKD_0031/A/73:78GNRA
homologous
HL_4AOB_003
HL_34789.1
HL_5FKD_0041/A/23:29Pseudoknot geometry
geometric
HL_4AOB_001
HL_30680.4
HL_5FKD_0051/A/49:54GNRA
geometric
HL_5F9F_003
HL_34789.1
HL_5FKD_0061/A/73:78GNRA
geometric
HL_5VCI_001
HL_34789.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5FKD_0011/A/13:15,
1/A/40:41
Single bulged A
homologous
IL_5FJC_001
IL_14190.1
IL_5FKD_0021/A/17:21,
1/A/31:38
Kink-turn
homologous
IL_4AOB_002
IL_94910.1
IL_5FKD_0031/A/44:47,
1/A/56:58
Major groove platform with extra pair
homologous
IL_5FJC_003
IL_15698.4
IL_5FKD_0041/A/64:69,
1/A/82:85
Pseudoknot
homologous
IL_4AOB_004
IL_69145.4
IL_5FKD_0051/A/13:15,
1/A/40:41
Single bulged A
geometric
IL_7RQB_069
NA
IL_5FKD_0061/A/17:21,
1/A/31:38
Kink-turn
geometric
IL_4GXY_005
NA
IL_5FKD_0071/A/44:47,
1/A/56:58
Major groove platform with extra pair
geometric
IL_5FJC_003
IL_15698.4
IL_5FKD_0081/A/64:69,
1/A/82:85
Pseudoknot
geometric
IL_4AOB_004
IL_69145.4

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J4_5FKD_0031/A/8:13,
1/A/41:42,
1/A/60:64,
1/A/85:86
SAM-I riboswitch junction
homologous
J4_4AOB_001
J4_40439.2
J4_5FKD_0041/A/8:13,
1/A/41:42,
1/A/60:64,
1/A/85:86
No text annotation

Problematic loops

#loop idProblemSequence
J4_5FKD_001No text annotation
J4_5FKD_002No text annotation

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