HL_5FL8_040

3D structure

PDB id

5FL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

5FL8|1|x|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FL8_040 not in the Motif Atlas

Geometric match to HL_4V9F_051

Geometric discrepancy: 0.3783

The information below is about HL_4V9F_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5FL8|1|x|U|2292
5FL8|1|x|C|2293
5FL8|1|x|U|2294
5FL8|1|x|A|2295
5FL8|1|x|A|2296
5FL8|1|x|U|2297
5FL8|1|x|U|2298
5FL8|1|x|A|2299
5FL8|1|x|G|2300

Current chains

Chain x

25S ribosomal RNA

Nearby chains