HL_5FLX_001
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- 5FLX|1|1|G|10
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5FLX_001 not in the Motif Atlas
- Homologous match to HL_4V88_186
- Geometric discrepancy: 0.4232
- The information below is about HL_4V88_186
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.2
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5FLX|1|1|G|7
5FLX|1|1|U|8
5FLX|1|1|U|9
5FLX|1|1|G|10
5FLX|1|1|A|11
5FLX|1|1|U|12
5FLX|1|1|C|13
5FLX|1|1|C|14
5FLX|1|1|U|15
5FLX|1|1|G|16
5FLX|1|1|C|17
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain C
- 40S RIBOSOMAL PROTEIN S2
- Chain X
- 40S RIBOSOMAL PROTEIN S23
Coloring options: