RNA 3D Hub //

5FLX Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5FLX_0011/1/7:17No text annotation
homologous
HL_4V88_186
NA
HL_5FLX_0031/1/156:162GNRA related
homologous
HL_4V88_188
NA
HL_5FLX_0061/1/288:295T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_5FLX_0081/1/377:387No text annotation
HL_5FLX_0091/1/416:421No text annotation
homologous
HL_4V88_194
NA
HL_5FLX_0101/1/441:452No text annotation
homologous
HL_4V88_195
NA
HL_5FLX_0111/1/462:467UNCG
homologous
HL_4V88_196
NA
HL_5FLX_0121/1/498:504No text annotation
homologous
HL_4V88_197
NA
HL_5FLX_0451/1/566:584No text annotation
HL_5FLX_0141/1/569:581No text annotation
geometric
HL_4V88_199
NA
HL_5FLX_0151/1/618:623No text annotation
geometric
HL_4WF9_003
HL_75660.6
HL_5FLX_0181/1/820:828No text annotation
homologous
HL_4V88_203
NA
HL_5FLX_0191/1/833:841No text annotation
HL_5FLX_0211/1/957:966No text annotation
homologous
HL_4V88_206
NA
HL_5FLX_0221/1/994:999GNRA
homologous
HL_4V88_207
NA
HL_5FLX_0241/1/1113:1120Externally structured
geometric
HL_8C3A_022
NA
HL_5FLX_0251/1/1141:1146GNRA
homologous
HL_4V88_210
NA
HL_5FLX_0261/1/1178:1183GNRA
homologous
HL_4V88_211
NA
HL_5FLX_0361/1/1847:1852GNRA variation
homologous
HL_4V88_222
NA
HL_5FLX_0371/z/79:87No text annotation
HL_5FLX_0401/z/230:237No text annotation
HL_5FLX_0441/z/304:313No text annotation

Problematic loops

#loop idProblemSequence
HL_5FLX_002No text annotation
HL_5FLX_004GNRA
HL_5FLX_005No text annotation
HL_5FLX_007No text annotation
HL_5FLX_013No text annotation
HL_5FLX_016No text annotation
HL_5FLX_017Externally structured
HL_5FLX_020Pseudoknot geometry
HL_5FLX_023No text annotation
HL_5FLX_027No text annotation
HL_5FLX_028Anticodon loop related
HL_5FLX_029GNRA
HL_5FLX_030No text annotation
HL_5FLX_031No text annotation
HL_5FLX_032No text annotation
HL_5FLX_033GNRA
HL_5FLX_034No text annotation
HL_5FLX_035No text annotation
HL_5FLX_038No text annotation
HL_5FLX_039No text annotation
HL_5FLX_041No text annotation
HL_5FLX_042No text annotation
HL_5FLX_043No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5FLX_0011/1/23:25,
1/1/649:651		Isolated non-canonical cWW pair
geometric
IL_5J7L_259
NA
IL_5FLX_0021/1/34:36,
1/1/519:521		Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_5FLX_0031/1/37:40,
1/1/514:518		Double sheared
geometric
IL_4WF9_016
IL_58355.1
IL_5FLX_0041/1/41:47,
1/1/479:481		No text annotation
homologous
IL_4V88_387
NA
IL_5FLX_0051/1/49:51,
1/1/476:477		Minor groove platform
homologous
IL_4V88_388
NA
IL_5FLX_0061/1/57:62,
1/1/86:88		No text annotation
homologous
IL_4V88_389
NA
IL_5FLX_1071/1/63:68,
1/1/81:85		No text annotation
homologous
IL_8P9A_379
IL_21667.2
IL_5FLX_0081/1/108:110,
1/1/351:353		Isolated non-canonical cWW pair
geometric
IL_1ZZ5_002
IL_01003.1
IL_5FLX_0101/1/115:121,
1/1/343:348		No text annotation
IL_5FLX_0111/1/145:151,
1/1/167:174		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_5FLX_0201/1/359:364,
1/1/396:403		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_5FLX_0211/1/366:371,
1/1/393:394		No text annotation
geometric
IL_4ERD_001
NA
IL_5FLX_0221/1/411:413,
1/1/424:429		No text annotation
homologous
IL_4V88_404
NA
IL_5FLX_0231/1/437:439,
1/1/454:456		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_5FLX_0241/1/459:461,
1/1/468:470		Isolated near basepair
homologous
IL_4V88_406
NA
IL_5FLX_0251/1/491:495,
1/1/508:509		C-loop
geometric
IL_5J7L_018
NA
IL_5FLX_0261/1/495:497,
1/1/505:508		Isolated cWS basepair
geometric
IL_5J7L_286
NA
IL_5FLX_0311/1/599:606,
1/1/636:637		SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_5FLX_0331/1/611:617,
1/1/624:632		Kink-turn related
homologous
IL_4V88_415
NA
IL_5FLX_0341/1/663:665,
1/1/1162:1164		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
NA
IL_5FLX_0351/1/665:671,
1/1/1161:1162		No text annotation
homologous
IL_4V88_416
NA
IL_5FLX_0361/1/673:675,
1/1/1030:1032		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_5FLX_0371/1/676:680,
1/1/1025:1029		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_5FLX_0401/1/801:803,
1/1/860:864		Major groove minor groove platform with extra cWW
geometric
IL_4WF9_012
IL_46387.2
IL_5FLX_0411/1/805:807,
1/1/856:858		Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_5FLX_0421/1/807:815,
1/1/849:856		No text annotation
IL_5FLX_1101/1/807:816,
1/1/848:856		No text annotation
IL_5FLX_0451/1/922:923,
1/1/1019:1022		Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_5FLX_1111/1/925:926,
1/1/1015:1017		Single bulged U
geometric
IL_7KVT_002
IL_97561.1
IL_5FLX_0471/1/928:931,
1/1/1010:1013		Tandem non-canonical cWW pairs
homologous
IL_4V88_430
NA
IL_5FLX_0481/1/931:935,
1/1/1007:1010		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_5FLX_0491/1/942:945,
1/1/981:984		Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_5FLX_0501/1/952:956,
1/1/967:974		Kink-turn
geometric
IL_7A0S_004
IL_94910.1
IL_5FLX_0511/1/1042:1047,
1/1/1071:1073		Other IL
homologous
IL_4V88_435
NA
IL_5FLX_0521/1/1047:1051,
1/1/1067:1071		tSH-tHW-tHS
geometric
IL_4V88_436
NA
IL_5FLX_0531/1/1091:1093,
1/1/1152:1158		No text annotation
homologous
IL_4V88_437
NA
IL_5FLX_0571/1/1168:1175,
1/1/1186:1191		8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_4LFB_034
IL_84044.1
IL_5FLX_0581/1/1202:1204,
1/1/1694:1697		Isolated non-canonical cWW pair
geometric
IL_4KYY_002
NA
IL_5FLX_0601/1/1214:1217,
1/1/1681:1685		C-loop
homologous
IL_4V88_443
NA
IL_5FLX_0701/1/1337:1338,
1/1/1488:1490		Single bulged A
homologous
IL_4V88_452
NA
IL_5FLX_0831/1/1700:1702,
1/1/1833:1836		No text annotation
geometric
IL_4V88_463
NA
IL_5FLX_0841/1/1702:1705,
1/1/1829:1833		No text annotation
homologous
IL_4V88_464
NA
IL_5FLX_0851/1/1706:1708,
1/1/1826:1828		Isolated non-canonical cWW pair
geometric
IL_3GM7_004
IL_01003.1
IL_5FLX_0861/1/1708:1711,
1/1/1822:1826		Non canonical cWW and near pair
homologous
IL_4V88_466
NA
IL_5FLX_0871/1/1714:1716,
1/1/1817:1819		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_5FLX_0881/1/1717:1720,
1/1/1813:1816		Double sheared
homologous
IL_4V88_468
NA
IL_5FLX_0891/1/1720:1722,
1/1/1812:1813		Single bulged U
geometric
IL_4V88_469
NA
IL_5FLX_0901/1/1729:1731,
1/1/1803:1805		Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_5FLX_0931/1/1739:1741,
1/1/1793:1795		Isolated non-canonical cWW pair
geometric
IL_4E48_003
IL_01003.1
IL_5FLX_0941/1/1742:1746,
1/1/1788:1792		Triple sheared
homologous
IL_4V88_474
NA
IL_5FLX_1011/z/70:75,
1/z/91:97		No text annotation

Problematic loops

#loop idProblemSequence
IL_5FLX_007No text annotation
IL_5FLX_009No text annotation
IL_5FLX_012Tandem non-canonical cWW pairs
IL_5FLX_013Double sheared with non-canonical cWW
IL_5FLX_014Isolated near basepair
IL_5FLX_015No text annotation
IL_5FLX_117No text annotation
IL_5FLX_016No text annotation
IL_5FLX_017Single bulged A
IL_5FLX_018Self complementary
IL_5FLX_019Single stack bend
IL_5FLX_027Isolated cWH basepair
IL_5FLX_028Single bulged A
IL_5FLX_029No text annotation
IL_5FLX_030Tandem non-canonical cWW pairs
IL_5FLX_108No text annotation
IL_5FLX_032Single bulged U
IL_5FLX_038Isolated non-canonical cWW pair
IL_5FLX_109No text annotation
IL_5FLX_039No text annotation
IL_5FLX_043No text annotation
IL_5FLX_044Isolated cWH basepair
IL_5FLX_046Tandem non-canonical cWW pairs
IL_5FLX_054Tandem non-canonical cWW pairs
IL_5FLX_055Isolated non-canonical cWW pair
IL_5FLX_056Single bulged U
IL_5FLX_112No text annotation
IL_5FLX_059Single bulged G
IL_5FLX_113No text annotation
IL_5FLX_061Isolated non-canonical cWW pair
IL_5FLX_062Minor groove platform
IL_5FLX_063Isolated non-canonical cWW pair
IL_5FLX_064Isolated non-canonical cWW pair
IL_5FLX_114No text annotation
IL_5FLX_065No text annotation
IL_5FLX_066No text annotation
IL_5FLX_067Single bulged U
IL_5FLX_068Isolated cWS basepair
IL_5FLX_115No text annotation
IL_5FLX_069Minor groove platform with extra cWW
IL_5FLX_071No text annotation
IL_5FLX_072Isolated cWH basepair
IL_5FLX_073Minor groove platform
IL_5FLX_074Tandem non-canonical cWW pairs
IL_5FLX_075Isolated non-canonical cWW pair
IL_5FLX_076No text annotation
IL_5FLX_077No text annotation
IL_5FLX_078Tandem non-canonical cWW pairs
IL_5FLX_079Isolated non-canonical cWW pair
IL_5FLX_116No text annotation
IL_5FLX_080No text annotation
IL_5FLX_081Isolated non-canonical cWW pair
IL_5FLX_082No text annotation
IL_5FLX_091Double sheared
IL_5FLX_092Isolated non-canonical cWW pair
IL_5FLX_095Other IL
IL_5FLX_096No text annotation
IL_5FLX_097No text annotation
IL_5FLX_098No text annotation
IL_5FLX_099No text annotation
IL_5FLX_100No text annotation
IL_5FLX_102No text annotation
IL_5FLX_103No text annotation
IL_5FLX_104No text annotation
IL_5FLX_105No text annotation
IL_5FLX_106No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5FLX_0111/1/40:41,
1/1/481:489,
1/1/511:514		No text annotation
J3_5FLX_0121/1/223:238,
1/1/283:288,
1/1/295:298		No text annotation
J3_5FLX_0131/1/682:685,
1/1/917:922,
1/1/1022:1023		No text annotation
J3_5FLX_0141/1/682:685,
1/1/917:923,
1/1/1019:1023		No text annotation
J3_5FLX_0011/1/816:819,
1/1/829:831,
1/1/843:848		No text annotation
homologous
J3_4V88_032
NA
J3_5FLX_0021/1/938:941,
1/1/985:993,
1/1/1000:1004		No text annotation
homologous
J3_4V88_033
NA
J3_5FLX_0031/1/1094:1096,
1/1/1136:1140,
1/1/1147:1151		No text annotation
J3_5FLX_0041/1/1218:1221,
1/1/1645:1651,
1/1/1673:1680		No text annotation
homologous
J3_4V88_035
NA
J4_5FLX_0011/1/98:106,
1/1/355:357,
1/1/405:409,
1/1/431:432		No text annotation
homologous
J4_8P9A_021
J4_15241.2
J4_5FLX_0021/1/671:673,
1/1/1032:1037,
1/1/1078:1089,
1/1/1160:1161		No text annotation
homologous
J4_8C3A_022
NA
J5_5FLX_0011/1/30:34,
1/1/521:527,
1/1/558:565,
1/1/585:595,
1/1/641:644		No text annotation
J5_5FLX_0021/1/53:57,
1/1/88:97,
1/1/433:436,
1/1/457:459,
1/1/470:474		No text annotation
J5_5FLX_0041/1/685:691,
1/1/739:745,
1/1/796:800,
1/1/865:877,
1/1/910:917		No text annotation

Problematic loops

#loop idProblemSequence
J3_5FLX_005No text annotation
J3_5FLX_006No text annotation
J3_5FLX_007No text annotation
J3_5FLX_015No text annotation
J3_5FLX_008No text annotation
J3_5FLX_016No text annotation
J3_5FLX_009No text annotation
J3_5FLX_010No text annotation
J4_5FLX_003No text annotation
J4_5FLX_004No text annotation
J4_5FLX_005No text annotation
J5_5FLX_003No text annotation

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