HL_5FLX_008
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUCGCCGUGCC
- Length
- 11 nucleotides
- Bulged bases
- 5FLX|1|1|G|385
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5FLX_008 not in the Motif Atlas
- Geometric match to HL_8GLP_091
- Geometric discrepancy: 0.1608
- The information below is about HL_8GLP_091
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50525.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5FLX|1|1|G|377
5FLX|1|1|U|378
5FLX|1|1|C|379
5FLX|1|1|G|380
5FLX|1|1|C|381
5FLX|1|1|C|382
5FLX|1|1|G|383
5FLX|1|1|U|384
5FLX|1|1|G|385
5FLX|1|1|C|386
5FLX|1|1|C|387
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain I
- 40S RIBOSOMAL PROTEIN S8
- Chain L
- 40S RIBOSOMAL PROTEIN S11
Coloring options: