HL_5FLX_014
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACUUUAAAUCCUU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5FLX_014 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.2211
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5FLX|1|1|A|569
5FLX|1|1|C|570
5FLX|1|1|U|571
5FLX|1|1|U|572
5FLX|1|1|U|573
5FLX|1|1|A|574
5FLX|1|1|A|575
5FLX|1|1|A|576
5FLX|1|1|U|577
5FLX|1|1|C|578
5FLX|1|1|C|579
5FLX|1|1|U|580
5FLX|1|1|U|581
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain J
- 40S RIBOSOMAL PROTEIN S9
- Chain Y
- 40S RIBOSOMAL PROTEIN S24
Coloring options: