HL_5FLX_015

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FLX_015 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2007

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

5FLX|1|1|C|618
5FLX|1|1|A|619
5FLX|1|1|G|620
5FLX|1|1|C|621
5FLX|1|1|C|622
5FLX|1|1|G|623

Current chains

Chain 1

18S RRNA

Nearby chains

Chain X

40S RIBOSOMAL PROTEIN S23

Chain z

Internal ribosome entry site; IRES