HL_5FLX_019

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

5FLX|1|1|G|836, 5FLX|1|1|C|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FLX_019 not in the Motif Atlas

Homologous match to HL_9H3G_092

Geometric discrepancy: 0.3964

The information below is about HL_9H3G_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34080.1

Basepair signature

cWW-cWH-F

Number of instances in this motif group

4

Unit IDs

5FLX|1|1|C|833
5FLX|1|1|C|834
5FLX|1|1|C|835
5FLX|1|1|G|836
5FLX|1|1|A|837
5FLX|1|1|G|838
5FLX|1|1|C|839
5FLX|1|1|C|840
5FLX|1|1|G|841

Current chains

Chain 1

18S RRNA

Nearby chains

Chain E

40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1

Chain J

40S RIBOSOMAL PROTEIN S9

Chain Y

40S RIBOSOMAL PROTEIN S24