HL_5FLX_031

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCCCGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FLX_031 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3208

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5FLX|1|1|C|1415
5FLX|1|1|C|1416
5FLX|1|1|C|1417
5FLX|1|1|C|1418
5FLX|1|1|C|1419
5FLX|1|1|G|1420
5FLX|1|1|A|1421
5FLX|1|1|G|1422

Current chains

Chain 1

18S RRNA

Nearby chains

Chain Q

40S RIBOSOMAL PROTEIN S16

Chain T

40S RIBOSOMAL PROTEIN S19