HL_5FLX_041

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUUGGGUCG

Length

10 nucleotides

Bulged bases

5FLX|1|z|U|269

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FLX|1|z|U|262
5FLX|1|z|G|263
5FLX|1|z|U|264
5FLX|1|z|U|265
5FLX|1|z|G|266
5FLX|1|z|G|267
5FLX|1|z|G|268
5FLX|1|z|U|269
5FLX|1|z|C|270
5FLX|1|z|G|271

Current chains

Chain z

HCV-IRES

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA

Chain B

40S RIBOSOMAL PROTEIN S3A

Chain b

40S RIBOSOMAL PROTEIN S27