HL_5G2X_007

3D structure

PDB id

5G2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure a of Group II Intron Complexed with its Reverse Transcriptase

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAAGUGUCUGAAACC

Length

17 nucleotides

Bulged bases

5G2X|1|A|A|238, 5G2X|1|A|A|239, 5G2X|1|A|A|240, 5G2X|1|A|G|241, 5G2X|1|A|A|248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_26476.1

Basepair signature

cWW-cSW-R-R-R-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

5G2X|1|A|G|236
5G2X|1|A|G|237
5G2X|1|A|A|238
5G2X|1|A|A|239
5G2X|1|A|A|240
5G2X|1|A|G|241
5G2X|1|A|U|242
5G2X|1|A|G|243
5G2X|1|A|U|244
5G2X|1|A|C|245
5G2X|1|A|U|246
5G2X|1|A|G|247
5G2X|1|A|A|248
5G2X|1|A|A|249
5G2X|1|A|A|250
5G2X|1|A|C|251
5G2X|1|A|C|252

Current chains

Chain A

GROUP II INTRON

Nearby chains