5G2X Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5G2X_005 | 1/A/188:196 | No text annotation | ||
| HL_5G2X_018 | 1/A/264:306 | No text annotation | ||
| HL_5G2X_008 | 1/A/268:292 | No text annotation | ||
| HL_5G2X_020 | 1/A/2407:2418 | No text annotation | ||
| HL_5G2X_014 | 1/A/2410:2415 | No text annotation | geometric HL_9AXU_017 HL_37569.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5G2X_016 | No text annotation | ||
| HL_5G2X_001 | No text annotation | ||
| HL_5G2X_002 | No text annotation | ||
| HL_5G2X_017 | No text annotation | ||
| HL_5G2X_021 | No text annotation | ||
| HL_5G2X_003 | No text annotation | ||
| HL_5G2X_004 | No text annotation | ||
| HL_5G2X_022 | No text annotation | ||
| HL_5G2X_006 | No text annotation | ||
| HL_5G2X_007 | No text annotation | ||
| HL_5G2X_009 | No text annotation | ||
| HL_5G2X_010 | No text annotation | ||
| HL_5G2X_011 | No text annotation | ||
| HL_5G2X_012 | No text annotation | ||
| HL_5G2X_019 | No text annotation | ||
| HL_5G2X_023 | No text annotation | ||
| HL_5G2X_013 | No text annotation | ||
| HL_5G2X_015 | GNRA with extra cWW |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5G2X_001 | 1/A/8:10, 1/A/388:389 | No text annotation | geometric IL_8B0X_089 IL_15011.1 | |
| IL_5G2X_014 | 1/A/2405:2406, 1/A/2419:2422 | Multiple bulged bases | homologous IL_1KXK_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5G2X_002 | No text annotation | ||
| IL_5G2X_003 | Isolated non-canonical cWW pair | ||
| IL_5G2X_004 | Tandem non-canonical cWW pairs | ||
| IL_5G2X_005 | No text annotation | ||
| IL_5G2X_006 | No text annotation | ||
| IL_5G2X_007 | Isolated non-canonical cWW pair | ||
| IL_5G2X_008 | No text annotation | ||
| IL_5G2X_009 | No text annotation | ||
| IL_5G2X_010 | No text annotation | ||
| IL_5G2X_020 | No text annotation | ||
| IL_5G2X_017 | No text annotation | ||
| IL_5G2X_011 | Tandem non-canonical cWW pairs | ||
| IL_5G2X_012 | No text annotation | ||
| IL_5G2X_013 | No text annotation | ||
| IL_5G2X_021 | No text annotation | ||
| IL_5G2X_015 | Tandem non-canonical cWW pairs | ||
| IL_5G2X_016 | No text annotation | ||
| IL_5G2X_018 | No text annotation | ||
| IL_5G2X_019 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_5G2X_002 | 1/A/174:219, 1/A/229:236, 1/A/252:264, 1/A/306:318, 1/A/331:360 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5G2X_001 | No text annotation | ||
| J5_5G2X_001 | No text annotation | ||
| J5_5G2X_003 | No text annotation |
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