HL_5GAD_013

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GACACGUGGUAUC

Length

13 nucleotides

Bulged bases

5GAD|1|A|G|386, 5GAD|1|A|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAD_013 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.2374

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5GAD|1|A|G|381
5GAD|1|A|A|382
5GAD|1|A|C|383
5GAD|1|A|A|384
5GAD|1|A|C|385
5GAD|1|A|G|386
5GAD|1|A|U|387
5GAD|1|A|G|388
5GAD|1|A|G|389
5GAD|1|A|U|390
5GAD|1|A|A|391
5GAD|1|A|U|392
5GAD|1|A|C|393

Current chains

Chain A

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L28