HL_5GAD_016

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

5GAD|1|A|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAD_016 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.1074

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5GAD|1|A|C|487
5GAD|1|A|G|488
5GAD|1|A|G|489
5GAD|1|A|C|490
5GAD|1|A|G|491
5GAD|1|A|A|492
5GAD|1|A|G|493

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L22

Chain i

Signal recognition particle protein Ffh