HL_5GAD_025

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

5GAD|1|A|U|958, 5GAD|1|A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAD_025 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1361

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

5GAD|1|A|U|955
5GAD|1|A|G|956
5GAD|1|A|C|957
5GAD|1|A|U|958
5GAD|1|A|A|959
5GAD|1|A|A|960
5GAD|1|A|C|961
5GAD|1|A|G|962

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain N

50S ribosomal protein L16