HL_5GAD_048

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5GAD|1|A|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAD_048 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1016

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5GAD|1|A|G|1949
5GAD|1|A|G|1950
5GAD|1|A|U|1951
5GAD|1|A|A|1952
5GAD|1|A|A|1953
5GAD|1|A|G|1954
5GAD|1|A|U|1955
5GAD|1|A|U|1956
5GAD|1|A|C|1957

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L14