HL_5GAD_049

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5GAD|1|A|A|2030, 5GAD|1|A|A|2031, 5GAD|1|A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAD_049 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1205

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

5GAD|1|A|G|2027
5GAD|1|A|U|2028
5GAD|1|A|G|2029
5GAD|1|A|A|2030
5GAD|1|A|A|2031
5GAD|1|A|G|2032
5GAD|1|A|A|2033
5GAD|1|A|U|2034
5GAD|1|A|G|2035
5GAD|1|A|C|2036

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain S

50S ribosomal protein L21

Chain b

50S ribosomal protein L32