HL_5GAD_065

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5GAD|1|A|G|2751, 5GAD|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAD_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0824

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5GAD|1|A|C|2745
5GAD|1|A|U|2746
5GAD|1|A|G|2747
5GAD|1|A|A|2748
5GAD|1|A|A|2749
5GAD|1|A|A|2750
5GAD|1|A|G|2751
5GAD|1|A|C|2752
5GAD|1|A|A|2753
5GAD|1|A|U|2754
5GAD|1|A|C|2755
5GAD|1|A|U|2756
5GAD|1|A|A|2757
5GAD|1|A|A|2758
5GAD|1|A|G|2759

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13

Chain f

50S ribosomal protein L36