HL_5GAE_004

3D structure

PDB id

5GAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with a translocating SecYEG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UUCG

Length

4 nucleotides

Bulged bases

5GAE|1|A|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAE_004 not in the Motif Atlas

Geometric match to HL_5VW1_002

Geometric discrepancy: 0.2497

The information below is about HL_5VW1_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5GAE|1|A|U|138
5GAE|1|A|U|139
5GAE|1|A|C|140
5GAE|1|A|G|141

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23