RNA 3D Hub //

5GAE Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5GAE_0011/A/59:68Pseudoknot with intercalation
homologous
HL_7A0S_001
HL_93438.2
HL_5GAE_0021/A/87:95No text annotation
homologous
HL_5J7L_135
HL_80241.1
HL_5GAE_0031/A/123:128No text annotation
homologous
HL_5J7L_136
HL_82710.2
HL_5GAE_0041/A/138:141Mini UNCG
geometric
HL_5VW1_002
HL_48778.2
HL_5GAE_0051/A/158:168No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_5GAE_0061/A/194:201No text annotation
homologous
HL_5J7L_139
HL_30068.2
HL_5GAE_0071/A/225:230No text annotation
homologous
HL_5J7L_140
HL_62934.1
HL_5GAE_0081/A/246:252No text annotation
homologous
HL_5J7L_141
HL_37369.2
HL_5GAE_0091/A/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
HL_01609.3
HL_5GAE_0101/A/319:323No text annotation
homologous
HL_5J7L_143
HL_75660.5
HL_5GAE_0111/A/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_5GAE_0711/A/382:392No text annotation
homologous
HL_5J7L_145
HL_91503.7
HL_5GAE_0131/A/410:417Pseudoknot geometry
homologous
HL_5J7L_146
HL_30680.3
HL_5GAE_0141/A/462:467GNRA
homologous
HL_4WF9_015
HL_37824.8
HL_5GAE_0151/A/487:493GNRA
homologous
HL_5J7L_148
HL_37824.8
HL_5GAE_0161/A/543:550No text annotation
homologous
HL_5J7L_149
HL_09452.1
HL_5GAE_0171/A/566:575T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
HL_28252.9
HL_5GAE_0181/A/611:617No text annotation
geometric
HL_361D_002
HL_13963.3
HL_5GAE_0191/A/629:634GNRA
homologous
HL_5J7L_152
HL_37824.8
HL_5GAE_0201/A/641:647No text annotation
homologous
HL_7RQB_021
NA
HL_5GAE_0211/A/712:719GNRA wlth tandem sheared
homologous
HL_5J7L_154
HL_81538.2
HL_5GAE_0221/A/744:753No text annotation
homologous
HL_7A0S_022
HL_88205.2
HL_5GAE_0231/A/779:785No text annotation
homologous
HL_5J7L_156
HL_87954.2
HL_5GAE_0241/A/826:831No text annotation
homologous
HL_4WF9_025
HL_55195.3
HL_5GAE_0251/A/955:962GNRA
homologous
HL_4WF9_027
HL_37824.8
HL_5GAE_0261/A/978:985No text annotation
homologous
HL_5J7L_160
HL_42998.2
HL_5GAE_0271/A/1064:1074No text annotation
homologous
HL_5J7L_161
HL_19210.3
HL_5GAE_0281/A/1092:1099GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_81538.2
HL_5GAE_0301/A/1222:1227GNRA
homologous
HL_5J7L_164
HL_37824.8
HL_5GAE_0311/A/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
HL_28252.9
HL_5GAE_0321/A/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
HL_57176.2
HL_5GAE_0331/A/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.8
HL_5GAE_0341/A/1389:1398No text annotation
homologous
HL_5J7L_168
HL_81545.2
HL_5GAE_0351/A/1451:1459No text annotation
HL_5GAE_0361/A/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
HL_57176.2
HL_5GAE_0371/A/1533:1538UNCG
homologous
HL_5J7L_171
HL_34617.5
HL_5GAE_0381/A/1565:1568Mini UNCG
homologous
HL_7A0S_039
HL_48778.2
HL_5GAE_0391/A/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_5GAE_0401/A/1630:1636GNRA
homologous
HL_5J7L_174
HL_37824.8
HL_5GAE_0411/A/1691:1696No text annotation
geometric
HL_7RQB_042
NA
HL_5GAE_0421/A/1727:1733No text annotation
geometric
HL_5J7L_018
HL_37344.1
HL_5GAE_0431/A/1752:1756No text annotation
homologous
HL_5J7L_177
HL_80709.3
HL_5GAE_0441/A/1777:1787No text annotation
homologous
HL_5J7L_178
HL_01962.2
HL_5GAE_0451/A/1806:1811GNRA related
homologous
HL_5J7L_179
HL_04783.2
HL_5GAE_0461/A/1868:1873GNRA variation
homologous
HL_5J7L_180
HL_37824.8
HL_5GAE_0471/A/1949:1957No text annotation
homologous
HL_7RQB_049
NA
HL_5GAE_0481/A/2027:2036No text annotation
homologous
HL_4WF9_047
HL_61996.3
HL_5GAE_0491/A/2143:2148No text annotation
homologous
HL_5J7L_184
NA
HL_5GAE_0501/A/2209:2215No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_5GAE_0511/A/2248:2256No text annotation
homologous
HL_7A0S_052
HL_85367.2
HL_5GAE_0521/A/2264:2276No text annotation
homologous
HL_5J7L_187
HL_91939.2
HL_5GAE_0531/A/2303:2313No text annotation
homologous
HL_5J7L_188
NA
HL_5GAE_0541/A/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
HL_93324.4
HL_5GAE_0551/A/2356:2361GNRA
homologous
HL_5J7L_190
HL_37824.8
HL_5GAE_0561/A/2374:2379GNRA
homologous
HL_5J7L_191
HL_37824.8
HL_5GAE_0571/A/2404:2413No text annotation
homologous
HL_5J7L_192
HL_53454.2
HL_5GAE_0581/A/2471:2479No text annotation
homologous
HL_5J7L_193
HL_32735.2
HL_5GAE_0591/A/2528:2535GNRA variation
homologous
HL_5J7L_194
HL_31585.4
HL_5GAE_0601/A/2551:2557No text annotation
homologous
HL_4WF9_058
HL_30068.2
HL_5GAE_0611/A/2594:2599GNRA
homologous
HL_5J7L_196
HL_37824.8
HL_5GAE_0621/A/2658:2663GNRA
geometric
HL_5B2T_003
HL_37824.8
HL_5GAE_0631/A/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
HL_65794.5
HL_5GAE_0641/A/2745:2759No text annotation
homologous
HL_5J7L_199
HL_74055.2
HL_5GAE_0651/A/2796:2799No text annotation
geometric
HL_6U8D_003
HL_32346.4
HL_5GAE_0661/A/2819:2827No text annotation
homologous
HL_5J7L_201
HL_64690.6
HL_5GAE_0671/A/2856:2861GNRA
homologous
HL_5J7L_202
HL_37824.8
HL_5GAE_0701/B/34:48No text annotation
homologous
HL_5J7L_215
HL_97756.2
HL_5GAE_0681/B/38:44No text annotation
homologous
HL_5J7L_203
HL_47787.2
HL_5GAE_0691/B/86:90Mini UNCG
homologous
HL_5J7L_204
HL_48778.2

Problematic loops

#loop idProblemSequence
HL_5GAE_012No text annotation
HL_5GAE_029No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5GAE_0011/A/24:30,
1/A/510:516		Triple sheared with non-canonical cWW
homologous
IL_5J7L_245
IL_04021.2
IL_5GAE_0021/A/36:37,
1/A/442:444		Single bulged A
homologous
IL_7RQB_002
NA
IL_5GAE_0031/A/43:44,
1/A/434:436		Minor groove platform
homologous
IL_5J7L_247
IL_51454.3
IL_5GAE_1201/A/82:85,
1/A/97:104		No text annotation
IL_5GAE_0051/A/183:184,
1/A/212:214		Single stack bend
homologous
IL_4WF9_007
IL_90729.1
IL_5GAE_0061/A/188:194,
1/A/201:208		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_250
IL_04346.10
IL_5GAE_0071/A/239:245,
1/A/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
IL_26307.2
IL_5GAE_0081/A/269:271,
1/A/366:370		No text annotation
homologous
IL_5J7L_252
IL_47972.1
IL_5GAE_0091/A/274:281,
1/A/359:363		No text annotation
homologous
IL_5J7L_253
IL_77870.1
IL_5GAE_0101/A/293:295,
1/A/343:347		No text annotation
homologous
IL_5J7L_254
IL_69440.3
IL_5GAE_0111/A/481:484,
1/A/496:509		No text annotation
homologous
IL_5J7L_255
IL_81516.2
IL_5GAE_0121/A/536:539,
1/A/554:557		Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_5GAE_0131/A/564:566,
1/A/575:577		Isolated non-canonical cWW pair
geometric
IL_5J7L_257
IL_07785.1
IL_5GAE_0141/A/606:610,
1/A/618:622		AAA cross-strand stack
homologous
IL_5J7L_258
IL_66798.2
IL_5GAE_0151/A/672:674,
1/A/806:808		No text annotation
geometric
IL_7RQB_017
NA
IL_5GAE_0161/A/674:678,
1/A/799:806		tHW-tHW cross-strand stack
homologous
IL_7RQB_018
NA
IL_5GAE_0171/A/697:698,
1/A/763:765		Single bulged A
geometric
IL_5J7L_261
IL_31462.7
IL_5GAE_0181/A/702:703,
1/A/728:730		Single bulged G
homologous
IL_5J7L_262
IL_00225.14
IL_5GAE_0191/A/703:707,
1/A/724:728		Triple sheared
geometric
IL_7RQB_021
NA
IL_5GAE_0201/A/738:740,
1/A/757:758		Major groove platform
homologous
IL_4WF9_026
IL_48076.6
IL_5GAE_0211/A/775:777,
1/A/787:791		Multiple bulged bases
homologous
IL_5J7L_265
IL_06549.2
IL_5GAE_0221/A/837:838,
1/A/940:942		Single stack bend
homologous
IL_5J7L_266
IL_90729.1
IL_5GAE_0231/A/844:847,
1/A/933:934		90 degree turn
geometric
IL_5J7L_267
IL_90729.1
IL_5GAE_1211/A/844:848,
1/A/930:934		No text annotation
homologous
IL_5J7L_399
IL_96236.1
IL_5GAE_0241/A/847:848,
1/A/930:933		Stack outside cWW
homologous
IL_5J7L_268
IL_56987.1
IL_5GAE_0251/A/850:851,
1/A/926:928		Single stack bend
homologous
IL_5J7L_269
IL_26793.1
IL_5GAE_0261/A/856:862,
1/A/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
IL_29198.2
IL_5GAE_0271/A/862:863,
1/A/913:915		Single bulged G
homologous
IL_5J7L_271
IL_00225.14
IL_5GAE_0281/A/864:868,
1/A/909:912		C-loop with bulged stacked A's
homologous
IL_5J7L_272
IL_26222.2
IL_5GAE_0291/A/870:872,
1/A/905:907		Isolated non-canonical cWW pair
homologous
IL_5J7L_273
IL_28037.2
IL_5GAE_0301/A/875:879,
1/A/897:902		No text annotation
IL_5GAE_0311/A/879:881,
1/A/895:897		Isolated non-canonical cWW pair
geometric
IL_1YZ9_002
IL_87907.2
IL_5GAE_0321/A/994:996,
1/A/1159:1160		Single bulged C
homologous
IL_5J7L_276
IL_61258.15
IL_5GAE_0331/A/998:1002,
1/A/1153:1157		UAA/GAN
homologous
IL_5J7L_277
IL_38507.2
IL_5GAE_0341/A/1004:1011,
1/A/1150:1151		SSU/LSU pseudoknot
homologous
IL_5J7L_278
IL_41203.4
IL_5GAE_0351/A/1011:1013,
1/A/1149:1150		Single bulged U
geometric
IL_5J7L_279
IL_89505.4
IL_5GAE_0361/A/1018:1024,
1/A/1140:1144		Kink-turn related
homologous
IL_5J7L_280
IL_57188.5
IL_5GAE_0371/A/1024:1030,
1/A/1124:1140		No text annotation
geometric
IL_5J7L_281
IL_50715.3
IL_5GAE_1221/A/1031:1033,
1/A/1122:1123		Single stack bend
geometric
IL_8C3A_012
NA
IL_5GAE_0391/A/1038:1041,
1/A/1114:1117		Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
IL_85033.2
IL_5GAE_0401/A/1043:1051,
1/A/1108:1112		Kink-turn
homologous
IL_5J7L_284
IL_99692.2
IL_5GAE_0411/A/1059:1062,
1/A/1076:1079		No text annotation
homologous
IL_6PRV_001
IL_92446.2
IL_5GAE_1231/A/1087:1090,
1/A/1101:1102		Major groove platform
homologous
IL_5J7L_385
IL_48076.6
IL_5GAE_0431/A/1196:1198,
1/A/1247:1250		Isolated cWS basepair
homologous
IL_5J7L_286
IL_42997.3
IL_5GAE_0441/A/1202:1206,
1/A/1240:1243		No text annotation
homologous
IL_5J7L_287
IL_91920.1
IL_5GAE_0451/A/1208:1215,
1/A/1234:1238		Kink-turn
homologous
IL_7RQB_047
NA
IL_5GAE_0461/A/1262:1269,
1/A/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
IL_04346.10
IL_5GAE_0471/A/1310:1313,
1/A/1603:1604		Major groove platform; stack outside cWW
homologous
IL_5J7L_290
IL_50694.7
IL_5GAE_0481/A/1319:1323,
1/A/1331:1333		C-loop
homologous
IL_5J7L_291
IL_63596.11
IL_5GAE_0491/A/1351:1355,
1/A/1376:1380		UAA/GAN
homologous
IL_5J7L_292
IL_89021.2
IL_5GAE_0501/A/1357:1361,
1/A/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_5GAE_0511/A/1415:1416,
1/A/1582:1587		No text annotation
homologous
IL_5J7L_294
IL_87211.1
IL_5GAE_0521/A/1417:1421,
1/A/1577:1581		UAA/GAN
homologous
IL_5J7L_295
IL_38507.2
IL_5GAE_0531/A/1432:1435,
1/A/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
IL_58112.2
IL_5GAE_0541/A/1437:1440,
1/A/1551:1555		tSH-tHW
homologous
IL_5J7L_297
IL_99646.2
IL_5GAE_0551/A/1450:1451,
1/A/1459:1461		Single bulged U
geometric
IL_5J7L_298
IL_89505.4
IL_5GAE_0561/A/1468:1471,
1/A/1520:1524		No text annotation
homologous
IL_5J7L_299
IL_68574.4
IL_5GAE_0571/A/1474:1478,
1/A/1513:1517		tSH-tHW-tHS
homologous
IL_5J7L_300
IL_38862.4
IL_5GAE_0581/A/1481:1482,
1/A/1507:1510		180 degree turn
homologous
IL_5J7L_301
IL_00881.1
IL_5GAE_0591/A/1489:1491,
1/A/1499:1500		Major groove platform
geometric
IL_7A0S_073
IL_48076.6
IL_5GAE_0601/A/1526:1529,
1/A/1542:1546		UAA/GAN variation
homologous
IL_5J7L_303
IL_23774.1
IL_5GAE_0611/A/1651:1656,
1/A/2004:2006		No text annotation
homologous
IL_7RQB_064
NA
IL_5GAE_0621/A/1663:1665,
1/A/1995:1997		Isolated tWW turn
homologous
IL_4WF9_063
IL_67095.2
IL_5GAE_0631/A/1666:1669,
1/A/1993:1994		Major groove platform; stack outside cWW
homologous
IL_5J7L_306
IL_50694.7
IL_5GAE_1241/A/1666:1674,
1/A/1990:1994		No text annotation
homologous
IL_5J7L_386
IL_22854.4
IL_5GAE_0641/A/1669:1674,
1/A/1990:1993		Intercalated tWH
geometric
IL_5J7L_307
IL_76758.2
IL_5GAE_0651/A/1686:1691,
1/A/1696:1702		tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA
IL_5GAE_0661/A/1712:1718,
1/A/1742:1746		6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
IL_88269.4
IL_5GAE_0671/A/1720:1724,
1/A/1736:1740		Triple sheared
homologous
IL_5J7L_310
IL_50730.2
IL_5GAE_0681/A/1770:1771,
1/A/1980:1982		Single bulged A
homologous
IL_7A0S_064
IL_31462.7
IL_5GAE_0691/A/1798:1804,
1/A/1813:1821		Kink-turn related
homologous
IL_5J7L_313
IL_17069.5
IL_5GAE_0701/A/1837:1840,
1/A/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_7A0S_066
IL_95583.2
IL_5GAE_0711/A/1841:1842,
1/A/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
IL_82107.5
IL_5GAE_0721/A/1846:1849,
1/A/1893:1894		Minor groove platform
homologous
IL_7RQB_073
NA
IL_5GAE_1251/A/1851:1860,
1/A/1882:1891		No text annotation
homologous
IL_5J7L_387
IL_61249.1
IL_5GAE_0731/A/1864:1867,
1/A/1874:1878		UAA/GAN related
homologous
IL_5J7L_317
IL_77691.5
IL_5GAE_0741/A/1933:1934,
1/A/1964:1967		Bulged stacked bases
homologous
IL_7RQB_076
NA
IL_5GAE_0751/A/1934:1945,
1/A/1961:1964		No text annotation
geometric
IL_7A0S_072
IL_04332.3
IL_5GAE_0761/A/2050:2052,
1/A/2617:2618		Major groove platform
homologous
IL_7RQB_078
NA
IL_5GAE_0771/A/2054:2056,
1/A/2612:2615		No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_5GAE_0781/A/2067:2069,
1/A/2442:2443		Single bulged U
homologous
IL_7RQB_080
NA
IL_5GAE_0791/A/2070:2071,
1/A/2438:2441		Minor groove platform
homologous
IL_7RQB_081
NA
IL_5GAE_0801/A/2081:2083,
1/A/2236:2239		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
IL_85599.2
IL_5GAE_0811/A/2085:2087,
1/A/2232:2234		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
IL_28037.2
IL_5GAE_0841/A/2103:2106,
1/A/2183:2186		Tandem non-canonical cWW pairs
geometric
IL_1QBP_002
IL_13404.2
IL_5GAE_1281/A/2108:2122,
1/A/2176:2181		No text annotation
IL_5GAE_0861/A/2124:2128,
1/A/2160:2174		Kink-turn related
homologous
IL_5J7L_329
IL_87290.1
IL_5GAE_0871/A/2129:2136,
1/A/2155:2159		Kink-turn
homologous
IL_5J7L_330
IL_70923.9
IL_5GAE_0901/A/2202:2204,
1/A/2220:2221		Single bulged U
homologous
IL_5J7L_331
IL_89505.4
IL_5GAE_0911/A/2297:2299,
1/A/2317:2321		No text annotation
geometric
IL_5J7L_332
IL_61476.2
IL_5GAE_0921/A/2350:2353,
1/A/2364:2367		Double sheared
homologous
IL_5J7L_333
IL_09705.15
IL_5GAE_0931/A/2401:2403,
1/A/2414:2415		Single bulged U
homologous
IL_4WF9_088
IL_89505.4
IL_5GAE_0941/A/2453:2454,
1/A/2498:2500		Single stack bend
homologous
IL_4WF9_089
IL_26793.1
IL_5GAE_0951/A/2454:2455,
1/A/2496:2498		Major groove platform
geometric
IL_7RQB_092
NA
IL_5GAE_0961/A/2457:2459,
1/A/2493:2494		Major groove platform
homologous
IL_7A0S_085
IL_48076.6
IL_5GAE_1271/A/2459:2461,
1/A/2489:2493		Major groove minor groove platform with extra cWW
homologous
IL_5J7L_337
IL_51387.3
IL_5GAE_0981/A/2466:2470,
1/A/2480:2484		Double sheared with non-canonical cWW
homologous
IL_5J7L_338
IL_17948.2
IL_5GAE_0991/A/2507:2508,
1/A/2580:2582		Major groove platform
homologous
IL_7A0S_088
IL_07039.3
IL_5GAE_1001/A/2510:2512,
1/A/2574:2578		Isolated non-canonical cWW with bulges
homologous
IL_5J7L_340
IL_07785.1
IL_5GAE_1011/A/2512:2513,
1/A/2571:2574		No text annotation
geometric
IL_5J7L_341
IL_42626.2
IL_5GAE_1021/A/2522:2523,
1/A/2540:2543		Major groove platform with intercalation
homologous
IL_5J7L_342
IL_02555.1
IL_5GAE_1031/A/2591:2592,
1/A/2601:2603		No text annotation
IL_5GAE_1041/A/2636:2640,
1/A/2774:2782		tSH-tHS-tHW
homologous
IL_5J7L_345
IL_04638.3
IL_5GAE_1051/A/2652:2658,
1/A/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7A0S_094
IL_16458.4
IL_5GAE_1061/A/2680:2684,
1/A/2725:2727		C-loop
homologous
IL_5J7L_347
IL_63596.11
IL_5GAE_1071/A/2687:2691,
1/A/2718:2722		UAA/GAN related, with intercalation
homologous
IL_5J7L_348
IL_23774.1
IL_5GAE_1081/A/2695:2696,
1/A/2711:2714		Multiple bulged bases
homologous
IL_4WF9_103
IL_42626.2
IL_5GAE_1091/A/2737:2742,
1/A/2762:2767		UAA/GAN with extra cWW
homologous
IL_7A0S_098
IL_49767.8
IL_5GAE_1101/A/2795:2796,
1/A/2799:2801		Single bulged A
geometric
IL_4WF9_022
IL_31462.7
IL_5GAE_1111/A/2806:2811,
1/A/2889:2892		No text annotation
homologous
IL_5J7L_351
IL_29471.1
IL_5GAE_1121/A/2838:2839,
1/A/2878:2880		Major groove intercalation
homologous
IL_5J7L_352
IL_66635.5
IL_5GAE_1131/A/2843:2846,
1/A/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
IL_64231.5
IL_5GAE_1141/A/2847:2852,
1/A/2865:2869		tHS double platform
homologous
IL_5J7L_354
IL_70411.2
IL_5GAE_1151/B/17:18,
1/B/65:67		Major groove intercalation
homologous
IL_5J7L_355
IL_31462.7
IL_5GAE_1161/B/23:28,
1/B/56:60		No text annotation
homologous
IL_5J7L_356
IL_18472.4
IL_5GAE_1171/B/30:31,
1/B/51:54		Major groove minor groove platform; mini C-loop
homologous
IL_4V9F_103
IL_68140.4
IL_5GAE_1181/B/34:38,
1/B/44:48		Symmetric double minor groove platform
geometric
IL_5J7L_358
IL_58103.11
IL_5GAE_1191/B/71:79,
1/B/97:105		Bacterial 5S Loop E
homologous
IL_5J7L_359
IL_56455.6

Problematic loops

#loop idProblemSequence
IL_5GAE_004No text annotation
IL_5GAE_038Other IL
IL_5GAE_042Major groove platform with extra cWW
IL_5GAE_082Isolated non-canonical cWW pair
IL_5GAE_083Isolated non-canonical cWW pair
IL_5GAE_085No text annotation
IL_5GAE_126No text annotation
IL_5GAE_088Isolated non-canonical cWW pair
IL_5GAE_089No text annotation
IL_5GAE_097No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5GAE_0111/A/30:31,
1/A/474:481,
1/A/509:510		No text annotation
geometric
J3_5J7L_036
J3_60031.2
J3_5GAE_0121/A/30:31,
1/A/474:484,
1/A/496:510		No text annotation
homologous
J3_4WF9_011
J3_92134.2
J3_5GAE_0131/A/32:35,
1/A/445:461,
1/A/468:473		No text annotation
homologous
J3_5J7L_067
J3_30040.2
J3_5GAE_0141/A/56:57,
1/A/70:76,
1/A/110:114		No text annotation
homologous
J3_5J7L_037
J3_35667.2
J3_5GAE_0011/A/683:689,
1/A/773:775,
1/A/791:794		No text annotation
homologous
J3_7RQB_004
NA
J3_5GAE_0021/A/698:700,
1/A/732:736,
1/A/760:763		No text annotation
homologous
J3_7RQB_005
NA
J3_5GAE_0031/A/1055:1057,
1/A/1081:1087,
1/A/1102:1104		No text annotation
homologous
J3_5J7L_040
J3_28621.5
J3_5GAE_0041/A/1298:1303,
1/A/1625:1627,
1/A/1639:1642		No text annotation
homologous
J3_5J7L_041
J3_32852.6
J3_5GAE_0051/A/1306:1309,
1/A/1605:1611,
1/A/1620:1622		No text annotation
homologous
J3_7A0S_007
J3_71677.1
J3_5GAE_0151/A/1344:1349,
1/A/1382:1385,
1/A/1402:1403		No text annotation
homologous
J3_5J7L_043
J3_92705.1
J3_5GAE_0161/A/1424:1429,
1/A/1564:1565,
1/A/1568:1574		No text annotation
homologous
J3_5J7L_069
J3_34864.2
J3_5GAE_0061/A/2091:2093,
1/A/2196:2200,
1/A/2223:2228		Kink-turn 3-way junction
homologous
J3_5J7L_044
J3_89368.5
J3_5GAE_0171/A/2282:2284,
1/A/2384:2395,
1/A/2421:2427		No text annotation
homologous
J3_5J7L_070
J3_20992.1
J3_5GAE_0071/A/2295:2297,
1/A/2321:2323,
1/A/2332:2337		No text annotation
homologous
J3_5J7L_045
J3_61124.2
J3_5GAE_0181/A/2295:2299,
1/A/2317:2323,
1/A/2332:2337		No text annotation
homologous
J3_5J7L_071
J3_44961.1
J3_5GAE_0081/A/2517:2520,
1/A/2545:2547,
1/A/2561:2567		No text annotation
homologous
J3_4WF9_009
J3_32601.5
J3_5GAE_0191/A/2789:2791,
1/A/2805:2806,
1/A/2892:2894		No text annotation
homologous
J3_5J7L_047
J3_30104.1
J3_5GAE_0091/A/2812:2815,
1/A/2831:2836,
1/A/2882:2888		No text annotation
homologous
J3_5J7L_048
J3_64069.1
J3_5GAE_0101/B/10:16,
1/B/68:70,
1/B/106:110		No text annotation
homologous
J3_5J7L_049
J3_89095.1
J4_5GAE_0011/A/268:269,
1/A/370:375,
1/A/399:406,
1/A/421:424		No text annotation
homologous
J4_5J7L_018
J4_45801.6
J4_5GAE_0021/A/297:301,
1/A/316:319,
1/A/323:325,
1/A/337:341		No text annotation
homologous
J4_5J7L_019
J4_71729.5
J4_5GAE_0031/A/601:604,
1/A/624:628,
1/A/635:638,
1/A/650:656		No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_5GAE_0041/A/1270:1276,
1/A/1294:1295,
1/A/1645:1648,
1/A/2009:2010		No text annotation
homologous
J4_5J7L_021
J4_64571.5
J4_5GAE_0051/A/1310:1314,
1/A/1338:1343,
1/A/1404:1405,
1/A/1597:1604		No text annotation
homologous
J4_5J7L_022
J4_69051.6
J4_5GAE_0061/A/1313:1314,
1/A/1338:1343,
1/A/1404:1405,
1/A/1597:1603		No text annotation
homologous
J4_5J7L_023
J4_10313.5
J4_5GAE_0071/A/1444:1445,
1/A/1466:1467,
1/A/1525:1526,
1/A/1546:1547		No text annotation
homologous
J4_5J7L_024
J4_24280.2
J4_5GAE_0081/A/1772:1776,
1/A/1788:1792,
1/A/1827:1830,
1/A/1975:1979		No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_5GAE_0091/A/1833:1835,
1/A/1905:1906,
1/A/1924:1933,
1/A/1967:1972		No text annotation
homologous
J4_5J7L_026
J4_93343.1
J4_5GAE_0101/A/2285:2289,
1/A/2343:2347,
1/A/2370:2372,
1/A/2381:2383		No text annotation
homologous
J4_5J7L_027
J4_04930.6
J4_5GAE_0111/A/2643:2646,
1/A/2674:2676,
1/A/2731:2735,
1/A/2769:2771		No text annotation
homologous
J4_5J7L_028
J4_77044.4
J5_5GAE_0011/A/47:54,
1/A/116:121,
1/A/130:131,
1/A/148:150,
1/A/176:178		No text annotation
homologous
J5_5J7L_013
J5_01737.2
J5_5GAE_0021/A/531:533,
1/A/560:564,
1/A/577:579,
1/A/1261:1262,
1/A/2017:2018		No text annotation
homologous
J5_5J7L_014
J5_43153.5
J5_5GAE_0031/A/584:589,
1/A/668:671,
1/A/809:812,
1/A/1195:1196,
1/A/1250:1256		No text annotation
homologous
J5_5J7L_015
J5_74302.5
J5_5GAE_0041/A/1674:1682,
1/A/1706:1707,
1/A/1751:1752,
1/A/1756:1764,
1/A/1988:1990		No text annotation
homologous
J5_5J7L_016
J5_62523.6
J5_5GAE_0051/A/2057:2064,
1/A/2446:2453,
1/A/2500:2507,
1/A/2582:2588,
1/A/2606:2611		No text annotation
J5_5GAE_0061/A/2074:2077,
1/A/2243:2246,
1/A/2258:2259,
1/A/2281:2282,
1/A/2427:2435		No text annotation
homologous
J5_4WF9_007
J5_39529.1
J6_5GAE_0011/A/45:46,
1/A/179:183,
1/A/214:224,
1/A/231:235,
1/A/262:266,
1/A/426:433		No text annotation
J6_5GAE_0021/A/2074:2077,
1/A/2243:2246,
1/A/2258:2259,
1/A/2281:2284,
1/A/2384:2395,
1/A/2421:2435		No text annotation
J7_5GAE_0011/A/8:15,
1/A/525:531,
1/A/2018:2023,
1/A/2040:2043,
1/A/2625:2630,
1/A/2788:2789,
1/A/2894:2895		No text annotation
J7_5GAE_0021/A/817:822,
1/A/835:837,
1/A/942:946,
1/A/971:976,
1/A/987:991,
1/A/1163:1164,
1/A/1185:1190		No text annotation

Problematic loops

No problematic loops


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