HL_5GAE_020

3D structure

PDB id

5GAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with a translocating SecYEG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

5GAE|1|A|U|646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAE_020 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.3235

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5GAE|1|A|U|641
5GAE|1|A|U|642
5GAE|1|A|A|643
5GAE|1|A|A|644
5GAE|1|A|C|645
5GAE|1|A|U|646
5GAE|1|A|G|647

Current chains

Chain A

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L33

Chain e

50S ribosomal protein L35