HL_5GAE_034

3D structure

PDB id

5GAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with a translocating SecYEG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5GAE|1|A|U|1396, 5GAE|1|A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAE_034 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.0969

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5GAE|1|A|G|1389
5GAE|1|A|U|1390
5GAE|1|A|U|1391
5GAE|1|A|A|1392
5GAE|1|A|A|1393
5GAE|1|A|U|1394
5GAE|1|A|A|1395
5GAE|1|A|U|1396
5GAE|1|A|U|1397
5GAE|1|A|C|1398

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain g

Protein translocase subunit SecY