HL_5GAF_025

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

5GAF|1|A|U|958, 5GAF|1|A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAF_025 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1361

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

5GAF|1|A|U|955
5GAF|1|A|G|956
5GAF|1|A|C|957
5GAF|1|A|U|958
5GAF|1|A|A|959
5GAF|1|A|A|960
5GAF|1|A|C|961
5GAF|1|A|G|962

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain N

50S ribosomal protein L16