3D structure

PDB id
5GAF (explore in PDB, NAKB, or RNA 3D Hub)
Description
RNC in complex with SRP
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
5GAF|1|A|U|1693
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5GAF_041 not in the Motif Atlas
Geometric match to HL_7RQB_042
Geometric discrepancy: 0.0771
The information below is about HL_7RQB_042
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_03562.2
Basepair signature
cWW-tSW-F
Number of instances in this motif group
56

Unit IDs

5GAF|1|A|C|1691
5GAF|1|A|U|1692
5GAF|1|A|U|1693
5GAF|1|A|C|1694
5GAF|1|A|G|1695
5GAF|1|A|G|1696

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2

Coloring options:


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