HL_5GAF_048

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5GAF|1|A|U|1955

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAF_048 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1016

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5GAF|1|A|G|1949
5GAF|1|A|G|1950
5GAF|1|A|U|1951
5GAF|1|A|A|1952
5GAF|1|A|A|1953
5GAF|1|A|G|1954
5GAF|1|A|U|1955
5GAF|1|A|U|1956
5GAF|1|A|C|1957

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L14