HL_5GAF_052

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5GAF|1|A|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAF_052 not in the Motif Atlas

Geometric match to HL_7A0S_052

Geometric discrepancy: 0.1004

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5GAF|1|A|C|2248
5GAF|1|A|U|2249
5GAF|1|A|G|2250
5GAF|1|A|G|2251
5GAF|1|A|G|2252
5GAF|1|A|G|2253
5GAF|1|A|C|2254
5GAF|1|A|G|2255
5GAF|1|A|G|2256

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

tRNA CCAend

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27