HL_5GAG_053

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

5GAG|1|A|A|2268, 5GAG|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAG_053 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0881

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5GAG|1|A|C|2264
5GAG|1|A|U|2265
5GAG|1|A|A|2266
5GAG|1|A|A|2267
5GAG|1|A|A|2268
5GAG|1|A|G|2269
5GAG|1|A|A|2270
5GAG|1|A|G|2271
5GAG|1|A|U|2272
5GAG|1|A|A|2273
5GAG|1|A|A|2274
5GAG|1|A|C|2275
5GAG|1|A|G|2276

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27