HL_5GAG_057

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAG_057 not in the Motif Atlas

Homologous match to HL_5J7L_191

Geometric discrepancy: 0.0946

The information below is about HL_5J7L_191

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5GAG|1|A|C|2374
5GAG|1|A|G|2375
5GAG|1|A|A|2376
5GAG|1|A|A|2377
5GAG|1|A|A|2378
5GAG|1|A|G|2379

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L18

Chain c

50S ribosomal protein L33