HL_5GAG_072

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAG_072 not in the Motif Atlas

Homologous match to HL_5J7L_212

Geometric discrepancy: 0.129

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5GAG|1|A|G|1091
5GAG|1|A|C|1092
5GAG|1|A|G|1093
5GAG|1|A|U|1094
5GAG|1|A|A|1095
5GAG|1|A|A|1096
5GAG|1|A|U|1097
5GAG|1|A|A|1098
5GAG|1|A|G|1099
5GAG|1|A|C|1100

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L11

Chain f

50S ribosomal protein L36