HL_5GAH_059

3D structure

PDB id

5GAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP with detached NG domain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

5GAH|1|A|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAH_059 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1418

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5GAH|1|A|A|2471
5GAH|1|A|G|2472
5GAH|1|A|U|2473
5GAH|1|A|U|2474
5GAH|1|A|C|2475
5GAH|1|A|A|2476
5GAH|1|A|U|2477
5GAH|1|A|A|2478
5GAH|1|A|U|2479

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain f

50S ribosomal protein L36