HL_5GAH_074

3D structure

PDB id

5GAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP with detached NG domain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAH_074 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.1469

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5GAH|1|A|G|2304
5GAH|1|A|U|2305
5GAH|1|A|C|2306
5GAH|1|A|G|2307
5GAH|1|A|G|2308
5GAH|1|A|A|2309
5GAH|1|A|C|2310
5GAH|1|A|A|2311
5GAH|1|A|U|2312

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L5