HL_5GAK_001
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CUGAACUUAAGCAUAUCAAUAAG
- Length
- 23 nucleotides
- Bulged bases
- 5GAK|1|1|A|40, 5GAK|1|1|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5GAK|1|1|C|31
5GAK|1|1|U|32
5GAK|1|1|G|33
5GAK|1|1|A|34
5GAK|1|1|A|35
5GAK|1|1|C|36
5GAK|1|1|U|37
5GAK|1|1|U|38
5GAK|1|1|A|39
5GAK|1|1|A|40
5GAK|1|1|G|41
5GAK|1|1|C|42
5GAK|1|1|A|43
5GAK|1|1|U|44
5GAK|1|1|A|45
5GAK|1|1|U|46
5GAK|1|1|C|47
5GAK|1|1|A|48
5GAK|1|1|A|49
5GAK|1|1|U|50
5GAK|1|1|A|51
5GAK|1|1|A|52
5GAK|1|1|G|53
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L42-A
- Chain N
- 60S ribosomal protein L13-A
- Chain P
- 60S ribosomal protein L15-A
- Chain c
- 60S ribosomal protein L28
- Chain l
- 60S ribosomal protein L37-A
Coloring options: