5GAK Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5GAK_001 | No text annotation | ||
| HL_5GAK_002 | No text annotation | ||
| HL_5GAK_003 | No text annotation | ||
| HL_5GAK_004 | Mini UNCG | ||
| HL_5GAK_005 | T-loop with 2 stacked bulged bases | ||
| HL_5GAK_006 | No text annotation | ||
| HL_5GAK_007 | T-loop with unstacked turn | ||
| HL_5GAK_008 | No text annotation | ||
| HL_5GAK_009 | Pseudoknot geometry | ||
| HL_5GAK_010 | GNRA | ||
| HL_5GAK_011 | GNRA | ||
| HL_5GAK_012 | No text annotation | ||
| HL_5GAK_013 | GNRA | ||
| HL_5GAK_014 | T-loop with 2 stacked bulged bases | ||
| HL_5GAK_015 | No text annotation | ||
| HL_5GAK_016 | GNRA | ||
| HL_5GAK_017 | GNRA | ||
| HL_5GAK_018 | No text annotation | ||
| HL_5GAK_019 | GNRA | ||
| HL_5GAK_020 | No text annotation | ||
| HL_5GAK_021 | No text annotation | ||
| HL_5GAK_022 | Externally structured | ||
| HL_5GAK_023 | GNRA | ||
| HL_5GAK_024 | No text annotation | ||
| HL_5GAK_025 | GNRA | ||
| HL_5GAK_026 | No text annotation | ||
| HL_5GAK_027 | No text annotation | ||
| HL_5GAK_028 | No text annotation | ||
| HL_5GAK_029 | No text annotation | ||
| HL_5GAK_030 | GNRA | ||
| HL_5GAK_031 | T-loop with 2 stacked bulged bases | ||
| HL_5GAK_032 | Pseudoknot geometry with 3' bulge | ||
| HL_5GAK_033 | GNRA variation | ||
| HL_5GAK_034 | No text annotation | ||
| HL_5GAK_035 | No text annotation | ||
| HL_5GAK_036 | GNRA | ||
| HL_5GAK_037 | No text annotation | ||
| HL_5GAK_038 | No text annotation | ||
| HL_5GAK_039 | UNCG variation | ||
| HL_5GAK_040 | No text annotation | ||
| HL_5GAK_041 | No text annotation | ||
| HL_5GAK_042 | GNRA | ||
| HL_5GAK_043 | UNCG | ||
| HL_5GAK_044 | No text annotation | ||
| HL_5GAK_045 | No text annotation | ||
| HL_5GAK_046 | No text annotation | ||
| HL_5GAK_047 | GNRA | ||
| HL_5GAK_048 | GNRA | ||
| HL_5GAK_049 | No text annotation | ||
| HL_5GAK_050 | No text annotation | ||
| HL_5GAK_051 | No text annotation | ||
| HL_5GAK_052 | No text annotation | ||
| HL_5GAK_053 | No text annotation | ||
| HL_5GAK_054 | No text annotation | ||
| HL_5GAK_087 | No text annotation | ||
| HL_5GAK_055 | No text annotation | ||
| HL_5GAK_056 | No text annotation | ||
| HL_5GAK_057 | No text annotation | ||
| HL_5GAK_058 | Pseudoknot geometry | ||
| HL_5GAK_059 | No text annotation | ||
| HL_5GAK_060 | GNRA | ||
| HL_5GAK_061 | Pseudoknot geometry | ||
| HL_5GAK_062 | No text annotation | ||
| HL_5GAK_063 | No text annotation | ||
| HL_5GAK_064 | No text annotation | ||
| HL_5GAK_065 | GNRA | ||
| HL_5GAK_066 | GNRA | ||
| HL_5GAK_067 | Ribsomal LSU H95 | ||
| HL_5GAK_068 | No text annotation | ||
| HL_5GAK_069 | Mini UNCG | ||
| HL_5GAK_070 | No text annotation | ||
| HL_5GAK_071 | No text annotation | ||
| HL_5GAK_085 | No text annotation | ||
| HL_5GAK_072 | Mini UNCG | ||
| HL_5GAK_073 | No text annotation | ||
| HL_5GAK_074 | GNRA | ||
| HL_5GAK_075 | Pseudoknot with intercalation | ||
| HL_5GAK_076 | No text annotation | ||
| HL_5GAK_077 | No text annotation | ||
| HL_5GAK_078 | No text annotation | ||
| HL_5GAK_079 | No text annotation | ||
| HL_5GAK_086 | tRNA D-loop | ||
| HL_5GAK_080 | tRNA anticodon loop | ||
| HL_5GAK_081 | No text annotation | ||
| HL_5GAK_082 | No text annotation | ||
| HL_5GAK_083 | tRNA anticodon loop | ||
| HL_5GAK_084 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5GAK_001 | Isolated cWH basepair | ||
| IL_5GAK_153 | No text annotation | ||
| IL_5GAK_002 | Single bulged C | ||
| IL_5GAK_173 | Tandem non-canonical cWW pairs | ||
| IL_5GAK_003 | No text annotation | ||
| IL_5GAK_004 | Isolated non-canonical cWW pair | ||
| IL_5GAK_154 | Single bulged U | ||
| IL_5GAK_005 | No text annotation | ||
| IL_5GAK_006 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_5GAK_007 | No text annotation | ||
| IL_5GAK_008 | Isolated non-canonical cWW pair | ||
| IL_5GAK_009 | Single stack bend | ||
| IL_5GAK_010 | No text annotation | ||
| IL_5GAK_155 | Minor groove platform | ||
| IL_5GAK_011 | Major groove platform with extra pair | ||
| IL_5GAK_012 | No text annotation | ||
| IL_5GAK_013 | Isolated non-canonical cWW pair | ||
| IL_5GAK_156 | Tandem non-canonical cWW pairs | ||
| IL_5GAK_014 | No text annotation | ||
| IL_5GAK_015 | No text annotation | ||
| IL_5GAK_016 | Tandem non-canonical cWW pairs | ||
| IL_5GAK_017 | Isolated non-canonical cWW pair | ||
| IL_5GAK_018 | Kink-turn related | ||
| IL_5GAK_019 | Single bulged A | ||
| IL_5GAK_020 | No text annotation | ||
| IL_5GAK_021 | No text annotation | ||
| IL_5GAK_022 | Isolated non-canonical cWW pair | ||
| IL_5GAK_023 | Isolated non-canonical cWW pair | ||
| IL_5GAK_024 | No text annotation | ||
| IL_5GAK_025 | UAA/GAN variation | ||
| IL_5GAK_157 | Triple sheared related | ||
| IL_5GAK_026 | Single bulged A | ||
| IL_5GAK_027 | Single bulged U | ||
| IL_5GAK_028 | No text annotation | ||
| IL_5GAK_029 | Isolated non-canonical cWW pair | ||
| IL_5GAK_030 | tHW-tHW cross-strand stack | ||
| IL_5GAK_031 | Single bulged G | ||
| IL_5GAK_032 | Triple sheared | ||
| IL_5GAK_033 | Major groove platform with extra cWW | ||
| IL_5GAK_034 | Single bulged U | ||
| IL_5GAK_035 | Multiple bulged bases | ||
| IL_5GAK_036 | Isolated non-canonical cWW pair | ||
| IL_5GAK_158 | Tandem non-canonical cWW pairs | ||
| IL_5GAK_037 | No text annotation | ||
| IL_5GAK_038 | 180 degree turn | ||
| IL_5GAK_159 | Tandem non-canonical cWW pairs | ||
| IL_5GAK_174 | Isolated non-canonical cWW pair | ||
| IL_5GAK_039 | Single bulged G | ||
| IL_5GAK_040 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_5GAK_041 | Minor groove platform | ||
| IL_5GAK_042 | C-loop with bulged stacked A's | ||
| IL_5GAK_043 | Tandem non-canonical cWW pairs | ||
| IL_5GAK_044 | Isolated non-canonical cWW pair | ||
| IL_5GAK_045 | Other IL | ||
| IL_5GAK_160 | No text annotation | ||
| IL_5GAK_046 | Isolated non-canonical cWW pair | ||
| IL_5GAK_047 | Isolated non-canonical cWW pair | ||
| IL_5GAK_161 | No text annotation | ||
| IL_5GAK_048 | Single bulged A | ||
| IL_5GAK_175 | Tandem non-canonical cWW pairs | ||
| IL_5GAK_162 | Partly complementary | ||
| IL_5GAK_049 | Tandem non-canonical cWW pairs | ||
| IL_5GAK_050 | UAA/GAN | ||
| IL_5GAK_051 | SSU/LSU pseudoknot | ||
| IL_5GAK_052 | Single bulged U | ||
| IL_5GAK_053 | No text annotation | ||
| IL_5GAK_054 | No text annotation | ||
| IL_5GAK_055 | Single bulged U | ||
| IL_5GAK_056 | No text annotation | ||
| IL_5GAK_057 | No text annotation | ||
| IL_5GAK_058 | Major groove platform with extra cWW | ||
| IL_5GAK_059 | No text annotation | ||
| IL_5GAK_163 | No text annotation | ||
| IL_5GAK_060 | Single bulged A | ||
| IL_5GAK_176 | Kink-turn | ||
| IL_5GAK_061 | No text annotation | ||
| IL_5GAK_062 | Single bulged A | ||
| IL_5GAK_063 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_5GAK_064 | No text annotation | ||
| IL_5GAK_065 | UAA/GAN | ||
| IL_5GAK_066 | No text annotation | ||
| IL_5GAK_067 | No text annotation | ||
| IL_5GAK_164 | Single stack bend | ||
| IL_5GAK_068 | No text annotation | ||
| IL_5GAK_069 | No text annotation | ||
| IL_5GAK_070 | No text annotation | ||
| IL_5GAK_071 | Triple sheared | ||
| IL_5GAK_072 | Isolated non-canonical cWW pair | ||
| IL_5GAK_073 | Single bulged C | ||
| IL_5GAK_165 | No text annotation | ||
| IL_5GAK_074 | Single stack bend | ||
| IL_5GAK_075 | No text annotation | ||
| IL_5GAK_076 | No text annotation | ||
| IL_5GAK_077 | Kink-turn | ||
| IL_5GAK_078 | Isolated non-canonical cWW pair | ||
| IL_5GAK_079 | No text annotation | ||
| IL_5GAK_166 | No text annotation | ||
| IL_5GAK_080 | No text annotation | ||
| IL_5GAK_081 | No text annotation | ||
| IL_5GAK_082 | No text annotation | ||
| IL_5GAK_083 | Isolated non-canonical cWW pair | ||
| IL_5GAK_084 | No text annotation | ||
| IL_5GAK_085 | Isolated non-canonical cWW pair | ||
| IL_5GAK_086 | Single bulged A | ||
| IL_5GAK_087 | Kink-turn related | ||
| IL_5GAK_088 | No text annotation | ||
| IL_5GAK_089 | Major groove intercalation | ||
| IL_5GAK_090 | Isolated non-canonical cWW pair | ||
| IL_5GAK_091 | No text annotation | ||
| IL_5GAK_092 | No text annotation | ||
| IL_5GAK_093 | Bulged stacked bases | ||
| IL_5GAK_094 | No text annotation | ||
| IL_5GAK_095 | No text annotation | ||
| IL_5GAK_167 | No text annotation | ||
| IL_5GAK_096 | No text annotation | ||
| IL_5GAK_097 | Single bulged U | ||
| IL_5GAK_098 | Minor groove platform | ||
| IL_5GAK_099 | Double sheared | ||
| IL_5GAK_168 | No text annotation | ||
| IL_5GAK_100 | Single stack bend | ||
| IL_5GAK_101 | No text annotation | ||
| IL_5GAK_102 | Single bulged A | ||
| IL_5GAK_103 | No text annotation | ||
| IL_5GAK_169 | Partly complementary | ||
| IL_5GAK_104 | Tandem non-canonical cWW pairs | ||
| IL_5GAK_105 | Single stack bend | ||
| IL_5GAK_106 | Major groove platform | ||
| IL_5GAK_107 | Isolated non-canonical cWW pair | ||
| IL_5GAK_170 | No text annotation | ||
| IL_5GAK_108 | No text annotation | ||
| IL_5GAK_171 | No text annotation | ||
| IL_5GAK_109 | No text annotation | ||
| IL_5GAK_110 | Major groove platform | ||
| IL_5GAK_111 | Isolated non-canonical cWW with bulges | ||
| IL_5GAK_112 | Multiple bulged bases | ||
| IL_5GAK_113 | Isolated non-canonical cWW pair | ||
| IL_5GAK_114 | Major groove platform with intercalation | ||
| IL_5GAK_115 | Isolated non-canonical cWW pair | ||
| IL_5GAK_116 | No text annotation | ||
| IL_5GAK_117 | Single bulged A | ||
| IL_5GAK_118 | Isolated non-canonical cWW pair | ||
| IL_5GAK_119 | Double sheared | ||
| IL_5GAK_120 | Isolated non-canonical cWW pair | ||
| IL_5GAK_121 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_5GAK_122 | No text annotation | ||
| IL_5GAK_123 | UAA/GAN related | ||
| IL_5GAK_124 | No text annotation | ||
| IL_5GAK_125 | UAA/GAN | ||
| IL_5GAK_126 | Isolated non-canonical cWW pair | ||
| IL_5GAK_127 | Isolated non-canonical cWW pair | ||
| IL_5GAK_128 | Single bulged A | ||
| IL_5GAK_129 | No text annotation | ||
| IL_5GAK_130 | Single bulged U | ||
| IL_5GAK_131 | No text annotation | ||
| IL_5GAK_132 | Isolated non-canonical cWW pair | ||
| IL_5GAK_133 | Tandem non-canonical cWW pairs | ||
| IL_5GAK_134 | Tandem non-canonical cWW pairs | ||
| IL_5GAK_135 | Single bulged U | ||
| IL_5GAK_136 | No text annotation | ||
| IL_5GAK_137 | No text annotation | ||
| IL_5GAK_138 | Single bulged U | ||
| IL_5GAK_139 | Double sheared; A in syn | ||
| IL_5GAK_140 | Multiple bulged bases | ||
| IL_5GAK_141 | Single bulged A | ||
| IL_5GAK_142 | Minor groove platform related | ||
| IL_5GAK_143 | Minor groove platform | ||
| IL_5GAK_172 | No text annotation | ||
| IL_5GAK_144 | Single stack bend | ||
| IL_5GAK_145 | Symmetric double minor groove platform | ||
| IL_5GAK_146 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_5GAK_147 | Isolated non-canonical cWW pair | ||
| IL_5GAK_148 | Single base bend | ||
| IL_5GAK_149 | Isolated non-canonical cWW pair | ||
| IL_5GAK_150 | No text annotation | ||
| IL_5GAK_151 | No text annotation | ||
| IL_5GAK_152 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5GAK_024 | 1/4/44:45, 1/4/58:64, 1/4/96:100 | No text annotation | homologous J3_8P4V_024 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5GAK_001 | No text annotation | ||
| J3_5GAK_011 | No text annotation | ||
| J3_5GAK_012 | No text annotation | ||
| J3_5GAK_025 | No text annotation | ||
| J3_5GAK_013 | No text annotation | ||
| J3_5GAK_014 | No text annotation | ||
| J3_5GAK_002 | No text annotation | ||
| J3_5GAK_003 | No text annotation | ||
| J3_5GAK_015 | No text annotation | ||
| J3_5GAK_004 | No text annotation | ||
| J3_5GAK_005 | No text annotation | ||
| J3_5GAK_006 | No text annotation | ||
| J3_5GAK_026 | No text annotation | ||
| J3_5GAK_016 | No text annotation | ||
| J3_5GAK_017 | No text annotation | ||
| J3_5GAK_018 | No text annotation | ||
| J3_5GAK_019 | No text annotation | ||
| J3_5GAK_007 | No text annotation | ||
| J3_5GAK_027 | No text annotation | ||
| J3_5GAK_020 | No text annotation | ||
| J3_5GAK_021 | No text annotation | ||
| J3_5GAK_008 | No text annotation | ||
| J3_5GAK_009 | No text annotation | ||
| J3_5GAK_022 | No text annotation | ||
| J3_5GAK_010 | No text annotation | ||
| J3_5GAK_023 | No text annotation | ||
| J4_5GAK_012 | No text annotation | ||
| J4_5GAK_001 | No text annotation | ||
| J4_5GAK_002 | No text annotation | ||
| J4_5GAK_013 | No text annotation | ||
| J4_5GAK_003 | No text annotation | ||
| J4_5GAK_004 | No text annotation | ||
| J4_5GAK_014 | No text annotation | ||
| J4_5GAK_005 | No text annotation | ||
| J4_5GAK_006 | No text annotation | ||
| J4_5GAK_007 | No text annotation | ||
| J4_5GAK_015 | No text annotation | ||
| J4_5GAK_008 | No text annotation | ||
| J4_5GAK_009 | No text annotation | ||
| J4_5GAK_010 | No text annotation | ||
| J4_5GAK_011 | No text annotation | ||
| J5_5GAK_001 | No text annotation | ||
| J5_5GAK_002 | No text annotation | ||
| J5_5GAK_003 | No text annotation | ||
| J5_5GAK_006 | No text annotation | ||
| J5_5GAK_004 | No text annotation | ||
| J5_5GAK_005 | No text annotation | ||
| J7_5GAK_001 | No text annotation | ||
| J9_5GAK_001 | No text annotation | ||
| J9_5GAK_002 | No text annotation |
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