HL_5GAK_004

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

5GAK|1|1|U|133, 5GAK|1|1|C|135

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAK_004 not in the Motif Atlas

Geometric match to HL_4WF9_037

Geometric discrepancy: 0.3296

The information below is about HL_4WF9_037

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5GAK|1|1|C|132
5GAK|1|1|U|133
5GAK|1|1|U|134
5GAK|1|1|C|135
5GAK|1|1|G|136

Current chains

Chain 1

25S rRNA

Nearby chains

Chain P

60S ribosomal protein L15-A

Chain j

60S ribosomal protein L35-A