HL_5GAK_034

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GAUUUUAUGC

Length

10 nucleotides

Bulged bases

5GAK|1|1|U|1568

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAK|1|1|G|1565
5GAK|1|1|A|1566
5GAK|1|1|U|1567
5GAK|1|1|U|1568
5GAK|1|1|U|1569
5GAK|1|1|U|1570
5GAK|1|1|A|1571
5GAK|1|1|U|1572
5GAK|1|1|G|1573
5GAK|1|1|C|1574

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain Z

60S ribosomal protein L25