HL_5GAK_035

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

5GAK|1|1|A|1602, 5GAK|1|1|U|1606, 5GAK|1|1|U|1607

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAK_035 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.2096

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5GAK|1|1|G|1599
5GAK|1|1|U|1600
5GAK|1|1|U|1601
5GAK|1|1|A|1602
5GAK|1|1|A|1603
5GAK|1|1|G|1604
5GAK|1|1|A|1605
5GAK|1|1|U|1606
5GAK|1|1|U|1607
5GAK|1|1|C|1608

Current chains

Chain 1

25S rRNA

Nearby chains

Chain T

60S ribosomal protein L19-A

Chain Z

60S ribosomal protein L25

Chain i

60S ribosomal protein L34-A