HL_5GAK_051

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

5GAK|1|1|A|2372, 5GAK|1|1|A|2373, 5GAK|1|1|C|2374

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAK_051 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1834

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

5GAK|1|1|G|2369
5GAK|1|1|G|2370
5GAK|1|1|G|2371
5GAK|1|1|A|2372
5GAK|1|1|A|2373
5GAK|1|1|C|2374
5GAK|1|1|G|2375
5GAK|1|1|G|2376
5GAK|1|1|G|2377
5GAK|1|1|C|2378

Current chains

Chain 1

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L3

Chain g

60S ribosomal protein L32

Chain h

60S ribosomal protein L33-A