HL_5GAK_054

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CCAUUCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAK_054 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3235

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

5GAK|1|1|C|2567
5GAK|1|1|C|2568
5GAK|1|1|A|2569
5GAK|1|1|U|2570
5GAK|1|1|U|2571
5GAK|1|1|C|2572
5GAK|1|1|G|2573
5GAK|1|1|G|2574

Current chains

Chain 1

25S rRNA

Nearby chains

Chain b

60S ribosomal protein L27-A