HL_5GAK_055
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 5GAK|1|1|G|2618
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5GAK_055 not in the Motif Atlas
- Homologous match to HL_8C3A_055
- Geometric discrepancy: 0.2545
- The information below is about HL_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
5GAK|1|1|C|2616
5GAK|1|1|U|2617
5GAK|1|1|G|2618
5GAK|1|1|G|2619
5GAK|1|1|G|2620
5GAK|1|1|G|2621
5GAK|1|1|C|2622
5GAK|1|1|G|2623
5GAK|1|1|G|2624
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain B
- Transfer RNA; tRNA
- Chain d
- 60S ribosomal protein L29
- Chain q
- Eukaryotic translation initiation factor 5A-1
- Chain s
- 60S ribosomal protein L10
Coloring options: