HL_5GAK_060

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAK_060 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.1699

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5GAK|1|1|U|2744
5GAK|1|1|G|2745
5GAK|1|1|A|2746
5GAK|1|1|A|2747
5GAK|1|1|A|2748
5GAK|1|1|G|2749

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L42-A

Chain H

60S ribosomal protein L5

Chain V

60S ribosomal protein L21-A