HL_5GAK_069

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

5GAK|1|1|U|3195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAK_069 not in the Motif Atlas

Geometric match to HL_4WF9_037

Geometric discrepancy: 0.2753

The information below is about HL_4WF9_037

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5GAK|1|1|C|3194
5GAK|1|1|U|3195
5GAK|1|1|U|3196
5GAK|1|1|G|3197

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L9-A

Chain O

60S ribosomal protein L14-B